RISE512
FASTA
Metadata
Reference
Data
| identifier | RISE512 |
|---|---|
| alternative_identifiers | ['6652-39'] |
| country | Russia |
| continent | Asia |
| region | Pontic steppe |
| culture | Andronovo |
| epoch | Bronze Age |
| group | BARu |
| comment | - |
| latitude | 53.459999084472656 |
| longitude | 85.44999694824219 |
| sex | M |
| site | Kytmanovo |
| site_detail | - |
| mt_hg | U2e1 |
| ychr_hg | R1a1a1 |
| year_from | -1446 |
| year_to | -1298 |
| date_detail | 1446-1298 calBCE (3119±27 BP, OxA-31217) |
| bp | 3119±27 |
| c14_lab_code | OxA-31217 |
| c14_sample_tag | True |
| c14_layer_tag | - |
| avg_coverage | - |
| sequence_source | bam |
| reference | Allentoft et al. 2015. Population genomics of Bronze Age Eurasia. Nature, 522(7555), 167-172. (link) |
| data_link | https://www.ebi.ac.uk/ena/data/view/PRJEB9021 |
| ychr_snps | ['R1a1a1:Page7:14498990C->T', 'R1a1a:L168:16202177A->G', 'R1a1:M459:6906074A->G', 'R1:CTS2680:14424045C->T', 'R:CTS3622:15078469C->G', 'R:F459:18017528G->T', 'R:L1347:22818334C->T', 'R:M613:7133986G->C', 'R:M764:21263029G->A'] |
| mitopathos | [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}] |
RISE512
