RISE512

FASTA

Metadata

Reference

Data

identifier	RISE512
alternative_identifiers	['6652-39']
country	Russia
continent	Asia
region	Pontic steppe
culture	Andronovo
epoch	Bronze Age
group	BARu
comment	-
latitude	53.459999084472656
longitude	85.44999694824219
sex	M
site	Kytmanovo
site_detail	-
mt_hg	U2e1
ychr_hg	R1a1a1
year_from	-1446
year_to	-1298
date_detail	1446-1298 calBCE (3119±27 BP, OxA-31217)
bp	3119±27
c14_lab_code	OxA-31217
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Allentoft et al. 2015. Population genomics of Bronze Age Eurasia. Nature, 522(7555), 167-172. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB9021
ychr_snps	['R1a1a1:Page7:14498990C->T', 'R1a1a:L168:16202177A->G', 'R1a1:M459:6906074A->G', 'R1:CTS2680:14424045C->T', 'R:CTS3622:15078469C->G', 'R:F459:18017528G->T', 'R:L1347:22818334C->T', 'R:M613:7133986G->C', 'R:M764:21263029G->A']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}]