RISE546

FASTA

Metadata

Reference

Data

identifier	RISE546
alternative_identifiers	['Kurgan 1', 'grave 13']
country	Russia
continent	Europe
region	Pontic steppe
culture	Yamnaya
epoch	Bronze Age
group	YAM
comment	-
latitude	46.540000915527344
longitude	43.70000076293945
sex	M
site	Temrta
site_detail	Site IV
mt_hg	U5a1d2b
ychr_hg	R1b1a1a2
year_from	-3000
year_to	-2400
date_detail	3000-2400 BCE
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Allentoft et al. 2015. Population genomics of Bronze Age Eurasia. Nature, 522(7555), 167-172. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB9021
ychr_snps	['R1:L875:16742224A->G', 'R:CTS207:2810583A->G', 'R:P285:19267344C->A', 'R:CTS7880:17723850C->T', 'R:F765:24360964G->A', 'R1b1a1a2:PF6482:18381735A->G', 'R1b1a:CTS7585:17545608G->T', 'R1b1:CTS2134:14193384G->A', 'R1b1a:L1345:21558298G->T']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]