| identifier |
RISE550 |
| alternative_identifiers |
['grave 3', 'Kurgan 1'] |
| country |
Russia |
| continent |
Europe |
| region |
Pontic steppe |
| culture |
Yamnaya |
| epoch |
Bronze Age |
| group |
YAM |
| comment |
- |
| latitude |
46.560001373291016 |
| longitude |
43.68000030517578 |
| sex |
M |
| site |
Peshany V |
| site_detail |
- |
| mt_hg |
U5a1i |
| ychr_hg |
R1b1a1a2 |
| year_from |
-3334 |
| year_to |
-2635 |
| date_detail |
3334-2635 calBCE (4312±94 BP, IGAN-2880) |
| bp |
4312±94 |
| c14_lab_code |
IGAN-2880 |
| c14_sample_tag |
True |
| c14_layer_tag |
- |
| avg_coverage |
- |
| sequence_source |
bam |
| reference |
Allentoft et al. 2015. Population genomics of Bronze Age Eurasia. Nature, 522(7555), 167-172.
(link)
|
| data_link |
https://www.ebi.ac.uk/ena/data/view/PRJEB9021
|
| ychr_snps |
['R1:CTS2680:14424045C->T', 'R:CTS3622:15078469C->G', 'R1:P286:17716251C->T', 'R:CTS2426:14300457G->A', 'R:F82:7548900G->A', 'R1:CTS997:7132713G->A', 'R:CTS7876:17722802G->A', 'R1b1:L1349:22722580T->C', 'R1b1a1a:CTS3876:15239181G->C', 'R1b1a1a:CTS7904:17732408T->C', 'R1b1a:PF6271:23984056G->A', 'R1b1a1a:CTS9018:18617596C->T', 'R1b1a1a:PF6418:6766034C->T', 'R1b1a:CTS4764:15803415G->A', 'R:CTS11075:22934109A->G', 'R1b1a1a2:CTS8591:18095336A->C', 'R1b1a1a2:L773:7220727A->G', 'R1b1a1a2:PF6494:20811307G->A', 'R1b1a1a2:CTS8728:18167403C->T', 'R1b1a1a2:PF6399:2668456C->T', 'R1b1a1a2:PF6430:8070532T->A', 'R1b1a1a2:PF6434:8411202A->G', 'R1b1a1a2:PF6438:9464078C->T', 'R1b1a1a2:PF6497:21222868C->G', 'R1b1a1a2:PF6500:21410840G->T', 'R1b1a1a:PF6498:21312064C->A', 'R1b1a:CTS3063:14637352T->C', 'R1b1a1a2:M520:4446430T->A', 'R1b1a1a:PF6506:21801722G->A', 'R1b1a1:L388:17400785G->A', 'R1b1:PF6270:23845409T->C']
|
| mitopathos |
[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]
|