RISE552

FASTA

Metadata

Reference

Data

identifier	RISE552
alternative_identifiers	['Kurgan 4', 'grave 8']
country	Russia
continent	Europe
region	Pontic steppe
culture	Yamnaya
epoch	Bronze Age
group	YAM
comment	-
latitude	46.619998931884766
longitude	43.33000183105469
sex	M
site	Ulan
site_detail	Site IV
mt_hg	T2a1a
ychr_hg	I2a2a1b1b2
year_from	-2849
year_to	-2143
date_detail	2849-2143 calBCE (3940±90 BP, IGAN-4079)
bp	3940±90
c14_lab_code	IGAN-4079
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Allentoft et al. 2015. Population genomics of Bronze Age Eurasia. Nature, 522(7555), 167-172. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB9021
ychr_snps	['I2:M438:16638804A->G', 'I:CTS48:2688442T->A', 'I:CTS1800:14073053G->A', 'I:CTS2387:14286853T->C', 'I:CTS3384:14884659A->C', 'I:CTS4088:15389836T->C', 'I:CTS4209:15479899T->A', 'I:CTS6265:16780748C->G', 'I:CTS7469:17497181C->A', 'I:CTS7502:17511797A->G', 'I:CTS7831:17692855T->A', 'I:CTS8420:18018313C->A', 'I:CTS8963:18582617C->T', 'I:CTS10941:22845794A->G', 'I:CTS11540:23156725C->T', 'I:FGC2412:21689728A->G', 'I:FGC2413:8262092C->T', 'I:FGC2415:13835003T->C', 'I:FI2:8382265C->G', 'I:L578:8267857G->A', 'I:L758:8536868C->G', 'I:L846:7856500C->T', 'I:L1197:14974451C->T', 'I:PF3627.2:6662712C->T', 'I:PF3640:7681156T->A', 'I:PF3660:8466652G->A', 'I:PF3661:8484606C->A', 'I:PF3665:8643763A->G', 'I:PF3677:9891668G->A', 'I:PF3794:21067903C->T', 'I:CTS4340:15595624G->A', 'I:CTS5946:16567253A->G', 'I:CTS6497:16939794A->T', 'I:FGC2414:21155653C->T', 'I:FGC2416:7642823G->T', 'I:FGC7049:22459264G->A', 'I:L847:23154034C->T', 'I:M1460:21862684A->C', 'I:PF3800:21402723A->G', 'I:PF3814:21839183A->G', 'I:PF3815:21841289G->T', 'I:PF3817:21939618G->A', 'I:PF3829:22458740A->G', 'I:Z16987:22243817A->G', 'I2:L68:18700150C->T', 'I:CTS4848:15862842C->T', 'I:PF3742:16354708G->A', 'I:CTS1301:7321418C->T', 'I:CTS11779:23267211G->A', 'I:PF3828:22458430C->T', 'I:CTS3383:14884646C->T', 'I:CTS5263:16171560G->A', 'I:CTS8545:18078759T->A', 'I2a2a1:CTS9183:18732197A->G', 'I2a2a:L34:7716262A->C', 'I2a2a:L59:7113556C->T', 'I2a2a:P222:18888200C->G', 'I:CTS4745:15793946G->A', 'I:CTS6344:16836548G->A', 'I:FGC2418:4974832A->G', 'I:PF3666:8728974T->G', 'I:PF3695:13914715A->T', 'I2a2:L35:22725379C->A', 'I2a2a:P223:16699334C->G', 'I2a2a1b1b2:S12195:9105096C->T', 'I2a2a1b1b2:S21579:18984739T->C', 'I2a2a1b1b2:Y5669:7266172A->G', 'I2a2a1b1b:L699:2663920A->G', 'I2a2a1b1:L701:6753316C->T', 'I2a2a1b1:L702:7629205C->T', 'I2a2a1b:CTS10100:19255890G->A', 'I2a2a:P219:15517851T->G', 'I2a2a:P220:24475669G->T', 'I2a2a:P221:8353707C->A', 'I2a2:L37:17516123T->C', 'I2a2:L181:19077754G->T', 'I2a2:P218:17493630T->G', 'I:CTS4664:15759200T->C', 'I:CTS4752:15799074C->T', 'I:CTS6334:16826642G->A', 'I:CTS8064:17818847G->A', 'I:PF3604:5206105C->T', 'I:PF3642:7712917A->T', 'I:PF3645:7853028C->A', 'I:PF3675:9516653T->G', 'I:PF3804:21465033C->A']
mitopathos	[{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '14687G', 'position': 14687, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TE'], 'diseases': ['Mito myopathy w respiratory failure / intellectual disability']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}]