RISE560

FASTA

Metadata

Reference

Data

identifier	RISE560
alternative_identifiers	['RISE560', 'F0187', 'gr 3']
country	Germany
continent	Europe
region	central Europe
culture	Bell Beaker
epoch	Neolithic
group	BBC
comment	-
latitude	48.33000183105469
longitude	10.899999618530273
sex	M
site	Augsburg
site_detail	-
mt_hg	U5a1a1
ychr_hg	R1b1a1a2
year_from	-2500
year_to	-2000
date_detail	2500-2000 BCE
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Allentoft et al. 2015. Population genomics of Bronze Age Eurasia. Nature, 522(7555), 167-172. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB9021
ychr_snps	['R1b1a1a2:L150.1:10008791C->T', 'R1b1a:CTS4244:15510064T->G', 'R1b1:PF6272:23992762C->A', 'R1:P234:21117888T->C', 'R:L747:16615413G->T', 'R:P224:17285993C->T']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '15924G', 'position': 15924, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-TT'], 'diseases': ['LIMM']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]