RISE94

FASTA

Metadata

Reference

Data

identifier	RISE94
alternative_identifiers	['grave 26:I']
country	Sweden
continent	Europe
region	Scandinavia
culture	Battle Axe
epoch	Neolithic
group	CWC
comment	-
latitude	56.029998779296875
longitude	14.229999542236328
sex	M
site	Viby
site_detail	-
mt_hg	K1a2a
ychr_hg	R1a1a1
year_from	-2621
year_to	-2472
date_detail	2621-2472 calBCE (4025±30 BP, OxA-29033)
bp	4025±30
c14_lab_code	OxA-29033
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Allentoft et al. 2015. Population genomics of Bronze Age Eurasia. Nature, 522(7555), 167-172. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB9021
ychr_snps	['R1a1a1:Page7:14498990C->T', 'R1a1:M459:6906074A->G', 'R1:CTS2680:14424045C->T', 'R:F459:18017528G->T', 'R:M613:7133986G->C', 'R1:CTS2565:14366723C->T', 'R1:CTS2908:14556851C->T', 'R1:CTS5611:16394489T->G', 'R1:L875:16742224A->G', 'R1:P231:9989615A->Ghet', 'R1:P245:8633545T->C', 'R1:P286:17716251C->T', 'R:CTS207:2810583A->G', 'R:CTS2426:14300457G->A', 'R:CTS8311:17930099C->A', 'R:CTS11647:23202551C->G', 'R:F82:7548900G->A', 'R:M651:9889199G->A', 'R:M718:17334694G->T', 'R:P280:21843090C->G', 'R:P285:19267344C->A']
mitopathos	[{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12192A', 'position': 12192, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TH'], 'diseases': ['MICM / possible G15927A deafness modulator']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}]