Rochedane

FASTA

Metadata

Reference

Data

identifier	Rochedane
alternative_identifiers	['Rochedane']
country	France
continent	Europe
region	western Europe
culture	Hunter-Gatherer
epoch	Epipaleolithic
group	HGW
comment	-
latitude	47.209999084472656
longitude	6.449999809265137
sex	M
site	Rochedane
site_detail	-
mt_hg	U5b2b
ychr_hg	I
year_from	-11140
year_to	-10880
date_detail	11140-10880 calBCE (11120±50 BP, GrA-41739)
bp	11120±50
c14_lab_code	GrA-41739
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Fu et al. 2016. The genetic history of Ice Age Europe. Nature, 534(7606), 200-205. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB13123
ychr_snps	['I:CTS4088:15389836T->C', 'I:CTS8420:18018313C->A', 'I:CTS10058:19233673A->G', 'I:PF3661:8484606C->A', 'I:PF3800:21402723A->G', 'I:CTS7593:17548890G->A', 'I:PF3803:21452125A->G']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12634G', 'position': 12634, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND5'], 'diseases': ['Thyroid Cancer Cell Line']}, {'allele': '13637G', 'position': 13637, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Possible LHON factor']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]