STR_248
FASTA
Metadata
Reference
Data
| identifier | STR_248 |
|---|---|
| alternative_identifiers | ['SAMEA104354405'] |
| country | Germany |
| continent | Europe |
| region | central Europe |
| culture | Germany_EMA |
| epoch | Middle Ages |
| group | MAGe |
| comment | - |
| latitude | 48.87327575683594 |
| longitude | 12.553182601928711 |
| sex | F |
| site | Straubing-Bajuwarenstraße |
| site_detail | 2 bow brooches, 2 eagle brooches, beads, chatelaine |
| mt_hg | H11a2 |
| ychr_hg | - |
| year_from | 530 |
| year_to | 560 |
| date_detail | 530 – 560 AD |
| bp | - |
| c14_lab_code | - |
| c14_sample_tag | - |
| c14_layer_tag | True |
| avg_coverage | 251.38999938964844 |
| sequence_source | bam |
| reference | Veeramah et al. 2018. Population genomic analysis of elongated skulls reveals extensive female-biased immigration in Early Medieval Bavaria. Proceedings of the National Academy of Sciences, 115(13), 3494-3499. (link) |
| data_link | https://www.ebi.ac.uk/ena/data/view/SAMEA104354405 |
| ychr_snps | - |
| mitopathos | [{'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '961G', 'position': 961, 'status': 'Unclear', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-RNR1'], 'diseases': ['Possibly DEAF-associated']}] |