STR_486

FASTA

Metadata

Reference

Data

identifier	STR_486
alternative_identifiers	['SAMEA104354415']
country	Germany
continent	Europe
region	central Europe
culture	Germany_EMA
epoch	Middle Ages
group	MAGe
comment	-
latitude	48.87327575683594
longitude	12.553182601928711
sex	M
site	Straubing-Bajuwarenstraße
site_detail	2 bow brooches, 2 eagle brooches, beads, chatelaine
mt_hg	T2b
ychr_hg	-
year_from	460
year_to	530
date_detail	460 – 530 AD
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	True
avg_coverage	399.04998779296875
sequence_source	bam
reference	Veeramah et al. 2018. Population genomic analysis of elongated skulls reveals extensive female-biased immigration in Early Medieval Bavaria. Proceedings of the National Academy of Sciences, 115(13), 3494-3499. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/SAMEA104354415
ychr_snps	-
mitopathos	[{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}]