SZ42

FASTA

Metadata

Reference

Data

identifier SZ42
alternative_identifiers -
country Hungary
continent Europe
region Pannonia
culture Longobards
epoch Middle Ages
group LONG
comment -
latitude 46.78821563720703
longitude 17.842775344848633
sex M
site Szólad
site_detail -
mt_hg K2a6
ychr_hg R1b1a1a2a1a2
year_from 412
year_to 604
date_detail 412-604 CE, single generation burial site, mid. 6th century
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag True
avg_coverage 9.739999771118164
sequence_source reconstructed
reference Amorim et al. 2018. Understanding 6th-century barbarian social organization and migration through paleogenomics. Nature Communications, 9(1), ?. (link)
data_link https://www.ncbi.nlm.nih.gov/biosample/8513213
ychr_snps ['S116']
mitopathos [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '146C', 'position': 146, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Absence of Endometriosis']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}]