identifier Spiginas2
alternative_identifiers -
country Lithuania
continent Europe
region Baltic
culture Corded Ware/Battle Axe
epoch Neolithic
group CWC
comment Late Neolithic
latitude 55.768001556396484
longitude 22.41699981689453
sex M
site Spiginas, Lithuania
site_detail grave 1
mt_hg I4a
ychr_hg R1a1a1b
year_from -2130
year_to -1750
date_detail 2130–1750 calBCE
bp 3580±60
c14_lab_code Poz-61573
c14_sample_tag True
c14_layer_tag -
avg_coverage 3.1640000343322754
sequence_source fasta
reference Mittnik et al. 2018. The genetic prehistory of the Baltic Sea region. Nature Communications, 9(1), ?. (link)
data_link https://www.ncbi.nlm.nih.gov/nuccore/MG429030.1
ychr_snps -
mitopathos [{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '15043A', 'position': 15043, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['MDD-associated']}, {'allele': '15924G', 'position': 15924, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-TT'], 'diseases': ['LIMM']}, {'allele': '16129A', 'position': 16129, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome with Migraine']}, {'allele': '8519A', 'position': 8519, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP8'], 'diseases': ['Susceptibility to bullous pemphigoid']}]