Spiginas2
FASTA
Metadata
Reference
Data
identifier | Spiginas2 |
---|---|
alternative_identifiers | - |
country | Lithuania |
continent | Europe |
region | Baltic |
culture | Corded Ware/Battle Axe |
epoch | Neolithic |
group | CWC |
comment | Late Neolithic |
latitude | 55.768001556396484 |
longitude | 22.41699981689453 |
sex | M |
site | Spiginas, Lithuania |
site_detail | grave 1 |
mt_hg | I4a |
ychr_hg | R1a1a1b |
year_from | -2130 |
year_to | -1750 |
date_detail | 2130–1750 calBCE |
bp | 3580±60 |
c14_lab_code | Poz-61573 |
c14_sample_tag | True |
c14_layer_tag | - |
avg_coverage | 3.1640000343322754 |
sequence_source | fasta |
reference | Mittnik et al. 2018. The genetic prehistory of the Baltic Sea region. Nature Communications, 9(1), ?. (link) |
data_link | https://www.ncbi.nlm.nih.gov/nuccore/MG429030.1 |
ychr_snps | - |
mitopathos | [{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '15043A', 'position': 15043, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['MDD-associated']}, {'allele': '15924G', 'position': 15924, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-TT'], 'diseases': ['LIMM']}, {'allele': '16129A', 'position': 16129, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome with Migraine']}, {'allele': '8519A', 'position': 8519, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP8'], 'diseases': ['Susceptibility to bullous pemphigoid']}] |
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Spiginas2