Spiginas4
FASTA
Metadata
Reference
Data
identifier | Spiginas4 |
---|---|
alternative_identifiers | - |
country | Lithuania |
continent | Europe |
region | Baltic |
culture | Kunda |
epoch | Mesolithic |
group | HGN |
comment | - |
latitude | 55.768001556396484 |
longitude | 22.41699981689453 |
sex | F |
site | Spiginas, Lithuania |
site_detail | grave 1 |
mt_hg | U4a2 |
ychr_hg | - |
year_from | -6440 |
year_to | -6230 |
date_detail | 6440–6230 calBCE |
bp | 7470±60 |
c14_lab_code | Gin-5571 |
c14_sample_tag | True |
c14_layer_tag | - |
avg_coverage | 1.121999979019165 |
sequence_source | fasta |
reference | Mittnik et al. 2018. The genetic prehistory of the Baltic Sea region. Nature Communications, 9(1), ?. (link) |
data_link | https://www.ncbi.nlm.nih.gov/nuccore/MG428998.1 |
ychr_snps | - |
mitopathos | [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '13708A', 'position': 13708, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND5'], 'diseases': ['LHON / Increased MS risk / higher freq in PD-ADS']}, {'allele': '15693C', 'position': 15693, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['Possibly LVNC cardiomyopathy-associated']}, {'allele': '499A', 'position': 499, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Endometriosis']}] |
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Spiginas4