Tamula1

FASTA

Metadata

Reference

Data

identifier	Tamula1
alternative_identifiers	-
country	Estonia
continent	Europe
region	Baltic
culture	Comb Ceramic
epoch	Neolithic
group	NEBL
comment	Midlle Neolithic
latitude	57.505001068115234
longitude	26.583999633789062
sex	F
site	Tamula, Estonia
site_detail	Tamula I
mt_hg	U5a1d2b
ychr_hg	-
year_from	-3630
year_to	-3360
date_detail	3630–3360 calBCE
bp	4680±40
c14_lab_code	Poz-15645
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	0.1679999977350235
sequence_source	fasta
reference	Mittnik et al. 2018. The genetic prehistory of the Baltic Sea region. Nature Communications, 9(1), ?. (link)
data_link	https://www.ncbi.nlm.nih.gov/nuccore/MG429018.1
ychr_snps	-
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]