Theo1
FASTA
Metadata
Reference
Data
| identifier | Theo1 |
|---|---|
| alternative_identifiers | - |
| country | Greece |
| continent | Europe |
| region | southern Europe |
| culture | Hunter-Gatherer |
| epoch | Mesolithic |
| group | HGS |
| comment | - |
| latitude | 39.682491302490234 |
| longitude | 21.681909561157227 |
| sex | F |
| site | Theopetra |
| site_detail | - |
| mt_hg | K1c |
| ychr_hg | - |
| year_from | -7288 |
| year_to | -6771 |
| date_detail | 7288–6771 calBCE |
| bp | 8070 ± 60 |
| c14_lab_code | - |
| c14_sample_tag | True |
| c14_layer_tag | - |
| avg_coverage | 21.700000762939453 |
| sequence_source | fasta |
| reference | Hofmanova et al. 2016. Early farmers from across Europe directly descended from Neolithic Aegeans. Proceedings of the National Academy of Sciences, 113(25), 6886-6891. (link) |
| data_link | https://www.ncbi.nlm.nih.gov/nuccore/1015812571 |
| ychr_snps | - |
| mitopathos | [{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '13967T', 'position': 13967, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Possible LHON factor']}, {'allele': '146C', 'position': 146, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Absence of Endometriosis']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}] |
Theo1
