Theo5

FASTA

Metadata

Reference

Data

identifier	Theo5
alternative_identifiers	-
country	Greece
continent	Europe
region	southern Europe
culture	Hunter-Gatherer
epoch	Mesolithic
group	HGS
comment	-
latitude	39.682491302490234
longitude	21.681909561157227
sex	U
site	Theopetra
site_detail	-
mt_hg	K1c
ychr_hg	-
year_from	-7605
year_to	-7529
date_detail	7605–7529 calBCE
bp	8549 ± 40
c14_lab_code	-
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	62.7400016784668
sequence_source	fasta
reference	Hofmanova et al. 2016. Early farmers from across Europe directly descended from Neolithic Aegeans. Proceedings of the National Academy of Sciences, 113(25), 6886-6891. (link)
data_link	https://www.ncbi.nlm.nih.gov/nuccore/KU171094
ychr_snps	-
mitopathos	[{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '13967T', 'position': 13967, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Possible LHON factor']}, {'allele': '146C', 'position': 146, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Absence of Endometriosis']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}]