Villabruna

FASTA

Metadata

Reference

Data

identifier	Villabruna
alternative_identifiers	['Villabruna']
country	Italy
continent	Europe
region	southern Europe
culture	Hunter-Gatherer
epoch	Epigravettian
group	HGS
comment	-
latitude	46.150001525878906
longitude	12.210000038146973
sex	M
site	Villabruna
site_detail	-
mt_hg	U5b2b
ychr_hg	R1b1a
year_from	-12230
year_to	-11830
date_detail	12230-11830 calBCE (12140±70 BP, KIA-27004)
bp	12140±70
c14_lab_code	KIA-27004
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	14.798800468444824
sequence_source	bam
reference	Fu et al. 2016. The genetic history of Ice Age Europe. Nature, 534(7606), 200-205. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB13123
ychr_snps	['R:CTS3622:15078469C->G', 'R:L1347:22818334C->T', 'R1:CTS2565:14366723C->T', 'R1:CTS2908:14556851C->T', 'R1:CTS5611:16394489T->G', 'R1:L875:16742224A->G', 'R1:P231:9989615A->Ghet', 'R1:P245:8633545T->C', 'R1:P286:17716251C->T', 'R:CTS8311:17930099C->A', 'R:F82:7548900G->A', 'R:M651:9889199G->A', 'R:M718:17334694G->T', 'R:P285:19267344C->A', 'R1b1a:CTS4244:15510064T->G', 'R:P224:17285993C->T', 'R1b1a:L754:22889018G->A', 'R1b1a:L761:16773870A->G', 'R1:CTS3321:14829196C->T', 'R1:F93:7671535C->T', 'R1:M306:22750583C->A', 'R1:P236:17782178C->G', 'R1:P238:7771131G->A', 'R1:P242:7647357G->A', 'R1:P294:7570822G->C', 'R:CTS6417:16882568T->C', 'R:CTS7876:17722802G->A', 'R:F33:6701239G->A', 'R:F63:7177189G->A', 'R:F652:23631629C->A', 'R:FGC1168:15667208G->C', 'R:L1225:22733758C->G', 'R:M734:18066156C->T', 'R:M799:23134896C->T', 'R:P227:21409706G->C', 'R:F370:16856357T->C', 'R:F765:24360964G->A', 'R1b1:L1349:22722580T->C', 'R1b1a:PF6271:23984056G->A', 'R1b1:L278:18914441C->T', 'R1b:M343:2887824C->A', 'R1:P225:15590342G->T', 'R:F154:8558505T->C', 'R:CTS9005:18611644A->T', 'R:CTS11075:22934109A->G', 'R1b1a:A702:10038192G->A', 'R1b1a:CTS7585:17545608G->T', 'R1b1a:PF6263:21159055C->A', 'R1b1:CTS2134:14193384G->A', 'R1b1:M415:9170545C->A', 'R1b1:CTS2229:14226692T->A', 'R1b1a:FGC41:7900883C->A', 'R1b1a:L1345:21558298G->T', 'R1b1:CTS46:2686555G->A']
mitopathos	[{'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12634G', 'position': 12634, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND5'], 'diseases': ['Thyroid Cancer Cell Line']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]