arm1

FASTA

Metadata

Reference

Data

identifier arm1
alternative_identifiers ['Tomb 1', 'G9']
country Armenia
continent Asia
region Caucasus
culture Kura-Araxes
epoch Bronze Age
group BACA
comment Early Bronze Age
latitude 40.869998931884766
longitude 43.75
sex U
site Kaps
site_detail -
mt_hg K3
ychr_hg -
year_from -3000
year_to -2800
date_detail 3000-2800 BC
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag True
avg_coverage 25.299999237060547
sequence_source fasta
reference Margaryan et al. 2017. Eight Millennia of Matrilineal Genetic Continuity in the South Caucasus. Current Biology, 27(13), 2023-2028.e7. (link)
data_link https://www.ncbi.nlm.nih.gov/nuccore/MF362701
ychr_snps -
mitopathos [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '16093C', 'position': 16093, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}, {'allele': '9478C', 'position': 9478, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CO3'], 'diseases': ['Leigh Disease']}]