arm31

FASTA

Metadata

Reference

Data

identifier	arm31
alternative_identifiers	['Burial 20-1/23']
country	Armenia
continent	Asia
region	Caucasus
culture	Lchashen-Metsamor
epoch	Bronze Age
group	BACA
comment	Late Bronze Age
latitude	40.150001525878906
longitude	45.25
sex	U
site	Nerqin Getashen
site_detail	-
mt_hg	T1a9
ychr_hg	-
year_from	-1400
year_to	-1200
date_detail	1400-1200 BC
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	True
avg_coverage	44.099998474121094
sequence_source	fasta
reference	Margaryan et al. 2017. Eight Millennia of Matrilineal Genetic Continuity in the South Caucasus. Current Biology, 27(13), 2023-2028.e7. (link)
data_link	https://www.ncbi.nlm.nih.gov/nuccore/MF362713
ychr_snps	-
mitopathos	[{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '12397G', 'position': 12397, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['PD / early onset']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '4216C', 'position': 4216, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Insulin Resistance /possible adaptive high altitude variant / miscarriage']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}]