arm34

FASTA

Metadata

Reference

Data

identifier	arm34
alternative_identifiers	['ind. 1', 'Burial 28']
country	Armenia
continent	Asia
region	Caucasus
culture	Lchashen-Metsamor
epoch	Bronze Age
group	BACA
comment	Late Bronze Age
latitude	40.150001525878906
longitude	45.25
sex	U
site	Nerqin Getashen
site_detail	-
mt_hg	U3b
ychr_hg	-
year_from	-1348
year_to	-1175
date_detail	1348-1175 BC
bp	3049±29
c14_lab_code	-
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	146.8000030517578
sequence_source	fasta
reference	Margaryan et al. 2017. Eight Millennia of Matrilineal Genetic Continuity in the South Caucasus. Current Biology, 27(13), 2023-2028.e7. (link)
data_link	https://www.ncbi.nlm.nih.gov/nuccore/MF362716
ychr_snps	-
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '3398C', 'position': 3398, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['DMDF+HCM / GDM / possibly LVNC cardiomyopathy-associated']}, {'allele': '4640A', 'position': 4640, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Epilepsy']}]