arm51

FASTA

Metadata

Reference

Data

identifier arm51
alternative_identifiers ['135', 'bur-1', 'upper layer ind-3']
country Armenia
continent Asia
region Caucasus
culture Urartian
epoch Iron Age
group IACA
comment Late Iron Age
latitude 40.290000915527344
longitude 44.31999969482422
sex U
site Nerqin Naver
site_detail -
mt_hg U3b3
ychr_hg -
year_from -700
year_to -500
date_detail 700-500 BC
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag True
avg_coverage 14.600000381469727
sequence_source fasta
reference Margaryan et al. 2017. Eight Millennia of Matrilineal Genetic Continuity in the South Caucasus. Current Biology, 27(13), 2023-2028.e7. (link)
data_link https://www.ncbi.nlm.nih.gov/nuccore/MF362731
ychr_snps -
mitopathos [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '11150A', 'position': 11150, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Found in a Multiple Sclerosis patient']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '4640A', 'position': 4640, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Epilepsy']}]