arm52
FASTA
Metadata
Reference
Data
identifier | arm52 |
---|---|
alternative_identifiers | ['AG-15'] |
country | Armenia |
continent | Asia |
region | Caucasus |
culture | Chalcolithic |
epoch | Copper Age |
group | CACA |
comment | - |
latitude | 39.7400016784668 |
longitude | 46.77000045776367 |
sex | U |
site | Karintak |
site_detail | - |
mt_hg | U8b1a1 |
ychr_hg | - |
year_from | -4486 |
year_to | -4320 |
date_detail | 4486-4320 BC |
bp | 5635±29 |
c14_lab_code | - |
c14_sample_tag | True |
c14_layer_tag | - |
avg_coverage | 138.10000610351562 |
sequence_source | fasta |
reference | Margaryan et al. 2017. Eight Millennia of Matrilineal Genetic Continuity in the South Caucasus. Current Biology, 27(13), 2023-2028.e7. (link) |
data_link | https://www.ncbi.nlm.nih.gov/nuccore/MF362732 |
ychr_snps | - |
mitopathos | [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16129A', 'position': 16129, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome with Migraine']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '869T', 'position': 869, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-RNR1'], 'diseases': ['found in 1 HCM patient']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}] |




























































































arm52