arm52

FASTA

Metadata

Reference

Data

identifier	arm52
alternative_identifiers	['AG-15']
country	Armenia
continent	Asia
region	Caucasus
culture	Chalcolithic
epoch	Copper Age
group	CACA
comment	-
latitude	39.7400016784668
longitude	46.77000045776367
sex	U
site	Karintak
site_detail	-
mt_hg	U8b1a1
ychr_hg	-
year_from	-4486
year_to	-4320
date_detail	4486-4320 BC
bp	5635±29
c14_lab_code	-
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	138.10000610351562
sequence_source	fasta
reference	Margaryan et al. 2017. Eight Millennia of Matrilineal Genetic Continuity in the South Caucasus. Current Biology, 27(13), 2023-2028.e7. (link)
data_link	https://www.ncbi.nlm.nih.gov/nuccore/MF362732
ychr_snps	-
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16129A', 'position': 16129, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome with Migraine']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '869T', 'position': 869, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-RNR1'], 'diseases': ['found in 1 HCM patient']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}]