poz232

FASTA

Metadata

Reference

Data

identifier	poz232
alternative_identifiers	-
country	Poland
continent	Europe
region	central Europe
culture	Corded Ware
epoch	Neolithic
group	CWC
comment	-
latitude	50.44694519042969
longitude	23.70166778564453
sex	U
site	Hubinek
site_detail	Stan. 2, kurgan I, grave 8
mt_hg	U5a1b
ychr_hg	-
year_from	-3025
year_to	-2898
date_detail	3025 - 2898 BC (Poz-70675)
bp	-
c14_lab_code	Poz-70675
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	11.0
sequence_source	reconstructed
reference	Juras et al. 2018. Mitochondrial genomes reveal an east to west cline of steppe ancestry in Corded Ware populations. Scientific Reports, 8(1), ?. (link)
data_link	https://www.ncbi.nlm.nih.gov/popset/1464230165
ychr_snps	-
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '14668T', 'position': 14668, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND6'], 'diseases': ['Depressive Disorder associated']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '3736A', 'position': 3736, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND1'], 'diseases': ['LHON']}, {'allele': '6480A', 'position': 6480, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CO1'], 'diseases': ['Prostate Cancer / enriched in POAG cohort']}]