poz257

FASTA

Metadata

Reference

Data

identifier	poz257
alternative_identifiers	-
country	Czech Republic
continent	Europe
region	central Europe
culture	Corded Ware
epoch	Neolithic
group	CWC
comment	-
latitude	49.49613571166992
longitude	17.127538681030273
sex	U
site	Držovice
site_detail	Pastviska, H1, ob. 570
mt_hg	I4a
ychr_hg	-
year_from	-2600
year_to	-2200
date_detail	2600-2200 BC
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	-
avg_coverage	64.0
sequence_source	reconstructed
reference	Juras et al. 2018. Mitochondrial genomes reveal an east to west cline of steppe ancestry in Corded Ware populations. Scientific Reports, 8(1), ?. (link)
data_link	https://www.ncbi.nlm.nih.gov/popset/1464230165
ychr_snps	-
mitopathos	[{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '15043A', 'position': 15043, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['MDD-associated']}, {'allele': '15924G', 'position': 15924, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-TT'], 'diseases': ['LIMM']}, {'allele': '16129A', 'position': 16129, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome with Migraine']}, {'allele': '8519A', 'position': 8519, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP8'], 'diseases': ['Susceptibility to bullous pemphigoid']}]